Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| CESC | rs56309238 | chr16:1870147 | C/G | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs56318762 | chr17:29005971 | G/A | 0 | 221 | 14.27 | 9.83 | 1.23 | KM Plot |
| CESC | rs56378576 | chr17:29010120 | C/T | 0 | 220 | 14.1 | 10.2 | 1.23 | KM Plot |
| CESC | rs56667785 | chr16:1868613 | C/T | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs57027787 | chr16:1867841 | G/C | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs57120036 | chr16:1868313 | G/A | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs57316073 | chr17:29000165 | C/T | 0 | 221 | 14.27 | 9.83 | 1.23 | KM Plot |
| CESC | rs57323288 | chr16:1869493 | G/A | 4.58E-5 | 224 | 13.8 | 15.17 | 6.02 | KM Plot |
| CESC | rs5749495 | chr22:21940310 | A/G | 5.52E-5 | 224 | 15.7 | 12.83 | 7.57 | KM Plot |
| CESC | rs5749502 | chr22:21945096 | T/A | 6.02E-5 | 223 | 15.3 | 12.83 | 7.57 | KM Plot |
| CESC | rs5754166 | chr22:21930777 | C/T | 5.52E-5 | 224 | 15.7 | 12.83 | 7.57 | KM Plot |
| CESC | rs5754177 | chr22:21933428 | C/T | 5.52E-5 | 224 | 15.7 | 12.83 | 7.57 | KM Plot |
| CESC | rs5754234 | chr22:21942978 | A/T | 5.52E-5 | 224 | 15.7 | 12.83 | 7.57 | KM Plot |
| CESC | rs5754344 | chr22:21963786 | A/G | 4.87E-5 | 223 | 14.9 | 13.3 | 7.57 | KM Plot |
| CESC | rs5754387 | chr22:21974703 | C/G | 3.47E-5 | 224 | 7.57 | 15.1 | 15.3 | KM Plot |